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RIKEN Center for Biosystems Dynamics Research Laboratory for Epithelial Morphogenesis

Team Director: Yu-Chiun Wang (Ph.D.)

Research Summary

Yu-Chiun  Wang(Ph.D.)

The central question in developmental biology is how cells, tissues and organs acquire their specific functions and shapes. A large body of work over the past several decades has yielded a broad understanding of how functional specialization is achieved through differential gene expression. In contrast, far less is known about how cell shapes and tissue structures are controlled and remodeled. Although a general theme has emerged whereby cytoskeletal elements control the cell shapes, while alteration of individual cell shapes collectively organizes the tissue architecture, the underlying molecular and mechanical mechanisms remain poorly understood. My lab aims at identifying novel mechanisms that orchestrate the formation of three-dimensional epithelial structures. Our long-term goal is to comprehensively understand the mechanistic principles of tissue morphogenesis in order to conceptualize the origin of morphological diversity both within an organism and among evolutionary lineages.

We are currently focusing on how modifications of epithelial cell polarity control cell shapes using gastrulating Drosophila embryos as the model system. Our previous work identified a novel mechanism for cell shape changes whereby cell shortening is induced upon a basal repositioning of the apical-basal polarity and cell-cell adhesive apparatus adherens junctions. The cell shortening occurs in two narrow strips of cells, producing heterogeneities in cell height within the tissue, thereby allowing it to bend. The polarity-based mechanism represents the first instance wherein the initiation of epithelial folding does not involve the canonical myosin-dependent apical constriction. Since cell-cell adhesion and apical-basal polarization are two fundamental features of epithelial tissues, our work potentially heralds a general mechanism for cell shape changes and epithelial folding. In addition, we found that after initiation, the depths of epithelial folds differ depending on the degrees of neighboring cell invagination. Genetic evidence suggests that the strength of mechanical coupling between adherens junctions and their underlying actin cytoskeleton determines the extent of cell invagination. Our ongoing work promises to identify genes and forces that sculpt distinct morphological features.

We employ an integrated approach that combines genetic manipulation, two-photon deep tissue live imaging and computational cell shape reconstruction. We are also in the process of designing novel imaging strategies that could be used to visualize mechanical forces and computational algorithms that reconstruct and quantify 4D cell shapes. Furthermore, we will launch a multidisciplinary, international collaboration that combines genetics, computational and evolutionary approaches to analyze the history and function of transiently formed epithelial structures that do not eventually contribute to a body part or organ.

Main Research Fields

  • Biology

Related Research Fields

  • Biological Sciences

Keywords

  • Tissue morphogenesis
  • Cell shape change

Selected Publications

Papers with an asterisk(*) are based on research conducted outside of RIKEN.

  • 1. Huang, T.-Y., Lemke, S., Wang, Y.-C.:
    "Morphogenetic evolution with physical influences"
    Seminars in Cell & Developmental Biology (2026)
  • 2. Dey, B., Kaul, V., Kale, G., et al.
    "Divergent evolutionary strategies pre-empt tissue collision in gastrulation."
    Nature 646(8085), 637-646 (2025)
  • 3. Thukral, S., Dey, B., Wang, Y.-C.:
    "Integrating tissue and cytoplasmic rigidity transitions during morphogenesis."
    Development, Growth & Differentiation 67(7), 378-394 (2025)
  • 4. Gomez, J. M., Nolte, H., Vogelsang, E., et al.
    "Differential regulation of the proteome and phosphoproteome along the dorso-ventral axis of the early Drosophila embryo."
    eLife 13, e99263 (2024)
  • 5. Wen, F.-L., Kwan, C.W., Wang, Y.-C., Shibata, T.:
    "Autonomous epithelial folding induced by an intracellular mechano-polarity feedback loop."
    PLOS Computational Biology 17(12), e1009614 (2021)
  • 6. Eritano, A. S., Bromley, C. L., Bolea, Albero, A., et al.
    "Tissue-Scale Mechanical Coupling Reduces Morphogenetic Noise to Ensure Precision during Epithelial Folding."
    Developmental cell 53(2), 212-228 (2020)
  • 7. Takeda, M., Sami, M. M., Wang, Y.-C.:
    "A homeostatic apical microtubule network shortens cells for epithelial folding via a basal polarity shift."
    Nature Cell Biology 20, 36-45. (2018)
  • 8. Wen, F.-L., Wang, Y.-C., and Shibata, T.:
    "Epithelial folding driven by apical or basal-lateral modulation: geometric features, mechanical inference, and boundary effects."
    Biophys J 112.2683-95 (2017)
  • 9. *Wang, Y.-C., Khan, Z., Kaschube, M., and Wieschaus, E. F.:
    "Differential positioning of adherens junctions is associated with initiation of epithelial folding."
    Nature 484.390-3 (2012)
  • 10. *Wang, Y.-C., and Ferguson, E. L.
    "Spatial bistability of Dpp-receptor interactions during Drosophila dorsal-ventral patterning."
    Nature 434.229-34 (2005)

Recent Research Results

Related Links

Lab Members

Principal investigator

Yu-Chiun Wang
Team Director

Core members

Chun Wai Kwan
Research Scientist
Sameer Thukral
Research Scientist
Anne Rosfelter
Postdoctoral Researcher
Michiko Takeda
Technical Staff I
Nada Dougui
Research Associate
Anshuman Mishra
International Program Associate
Jayashree Mahajan
Research Associate
Aishwarya Bhushan
Intern
Yuko Fujiyama
Assistant

Contact Information

5F, RIKEN BDR Developmental Biology Bldg.A,
2-2-3 Minatojima-minamimachi, Chuo-ku
Kobe, Hyogo
650-0047 Japan
yu-chiun.wang@riken.jp

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