RIKEN Center for Sustainable Resource Science Metabolome Informatics Research Team

Team Director: Masanori Arita (D.Sc.)

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Research Summary

Our team develops software platforms necessary for metabolomic analyses, network analyses and computer simulations. We also design databases that help more efficient identification of metabolites. The developed software will be applied to integrated analysis of metabolomic and transcriptomic data collated by other teams to enable systematic understanding of plants.

Main Research Fields

Complex Systems

Related Research Fields

Interdisciplinary Science & Engineering
Biological Sciences

Keywords

Genome
Database
Metabolome
Algorithm

Selected Publications

1. Koistinen V, Kärkkäinen O, Keski-Rahkonen P, Tsugawa H, Scalbert A, Arita M, Wishart D, Hanhineva K.
"Towards a Rosetta stone for metabolomics: recommendations to overcome inconsistent metabolite nomenclature"
Nature Metabolism, 5(3), 351-354 (2023)
2. Moseley HNB, Rocca-Serra P, Salek RM, Arita M, Schymanski EL.
"InChI isotopologue and isotopomer specifications."
Journal of Cheminformatics, 16(1), 54 (2024)
3.Nakamukai, S., Hayakawa, E., Mori, T., Ise, Y., Hirai, Y. M., Arita, M.
"Retention order prediction of peptides containing non-proteinogenic amino acids"
Bioinformatics Advances, 5(1), vbaf246, (2025)